STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NKJ9_LEPOCSECA_MOTOR_DEAD domain-containing protein. (1015 aa)    
Predicted Functional Partners:
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.798
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
 0.776
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.719
cinp
Cyclin-dependent kinase 2 interacting protein.
    
 0.719
c8b
Complement component 8, beta polypeptide.
   
 0.674
aurka
Aurora kinase A; Belongs to the protein kinase superfamily.
    
 
 0.641
aurkb
Aurora kinase B; Belongs to the protein kinase superfamily.
    
 
 0.641
LOC102690085
IGv domain-containing protein.
    
   0.633
W5N6W0_LEPOC
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.623
LOC107079662
PID domain-containing protein.
   
 0.564
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.