STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NKQ2_LEPOCSPT7 like, STAGA complex gamma subunit. (418 aa)    
Predicted Functional Partners:
W5M3F8_LEPOC
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.990
W5MPR2_LEPOC
SPT20 homolog, SAGA complex component.
    
 0.988
W5MQE4_LEPOC
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.988
W5M2A3_LEPOC
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
    
 0.986
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.983
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.981
taf9b
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.980
W5MVP8_LEPOC
Transcriptional adapter.
    
 0.964
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.957
atxn7l3
Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.
    
 0.947
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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