STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NKR4_LEPOCReticulocalbin 3, EF-hand calcium binding domain. (165 aa)    
Predicted Functional Partners:
LOC102696301
Uncharacterized protein.
    
  0.573
fam20c
FAM20C golgi associated secretory pathway kinase b.
    
  0.573
calr3
Calreticulin.
   
 
 0.486
LOC102684739
Calreticulin.
   
 
 0.486
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.439
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.401
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.