tpd52l1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tpd52l1

Tpd52 like 1. (209 aa)

Predicted Functional Partners:

tpd52

0.869

LOC102693735

0.658

tpd52l2

0.628

LOC102691014

0.624

W5M302_LEPOC

0.593

cltc

0.593

rnf217

0.501

LOC102696857

0.462

RAB17

0.462

rab5a

0.462

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102691014	LOC102693735	ENSLOCP00000018436	ENSLOCP00000018549	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.649
LOC102691014	LOC102696857	ENSLOCP00000018436	ENSLOCP00000004937	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	RAB5B, member RAS oncogene family.	0.491
LOC102691014	RAB17	ENSLOCP00000018436	ENSLOCP00000005965	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	RAB17, member RAS oncogene family.	0.491
LOC102691014	W5M302_LEPOC	ENSLOCP00000018436	ENSLOCP00000002760	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.674
LOC102691014	cltc	ENSLOCP00000018436	ENSLOCP00000004653	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.674
LOC102691014	rab5a	ENSLOCP00000018436	ENSLOCP00000007962	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	RAB5A, member RAS oncogene family, b.	0.491
LOC102691014	tpd52	ENSLOCP00000018436	ENSLOCP00000003325	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Tumor protein D52.	0.586
LOC102691014	tpd52l1	ENSLOCP00000018436	ENSLOCP00000021356	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Tpd52 like 1.	0.624
LOC102691014	tpd52l2	ENSLOCP00000018436	ENSLOCP00000006205	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	Tpd52 like 2a.	0.584
LOC102693735	LOC102691014	ENSLOCP00000018549	ENSLOCP00000018436	Uncharacterized protein.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.649
LOC102693735	LOC102696857	ENSLOCP00000018549	ENSLOCP00000004937	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.504
LOC102693735	RAB17	ENSLOCP00000018549	ENSLOCP00000005965	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.504
LOC102693735	W5M302_LEPOC	ENSLOCP00000018549	ENSLOCP00000002760	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.615
LOC102693735	cltc	ENSLOCP00000018549	ENSLOCP00000004653	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.615
LOC102693735	rab5a	ENSLOCP00000018549	ENSLOCP00000007962	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.504
LOC102693735	tpd52	ENSLOCP00000018549	ENSLOCP00000003325	Uncharacterized protein.	Tumor protein D52.	0.658
LOC102693735	tpd52l1	ENSLOCP00000018549	ENSLOCP00000021356	Uncharacterized protein.	Tpd52 like 1.	0.658
LOC102696857	LOC102691014	ENSLOCP00000004937	ENSLOCP00000018436	RAB5B, member RAS oncogene family.	Synaptobrevin-like 1; Belongs to the synaptobrevin family.	0.491
LOC102696857	LOC102693735	ENSLOCP00000004937	ENSLOCP00000018549	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.504
LOC102696857	W5M302_LEPOC	ENSLOCP00000004937	ENSLOCP00000002760	RAB5B, member RAS oncogene family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.540