trim32 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

trim32

Tripartite motif containing 32. (646 aa)

Predicted Functional Partners:

ube2n

0.770

W5N4B5_LEPOC

0.767

W5NNI9_LEPOC

0.701

rps27a

0.686

trim8

0.667

LOC102691117

0.623

pde9a

0.623

abi1

0.594

uba52

0.589

W5M2C2_LEPOC

0.588

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102691117	trim32	ENSLOCP00000002520	ENSLOCP00000021449	Phosphodiesterase.	Tripartite motif containing 32.	0.623
W5M2C2_LEPOC	trim32	ENSLOCP00000002530	ENSLOCP00000021449	Phosphodiesterase.	Tripartite motif containing 32.	0.588
W5N4B5_LEPOC	W5NNI9_LEPOC	ENSLOCP00000015474	ENSLOCP00000022198	Transmembrane protein 173.	Uncharacterized protein.	0.758
W5N4B5_LEPOC	rps27a	ENSLOCP00000015474	ENSLOCP00000019146	Transmembrane protein 173.	Ribosomal protein S27a.	0.765
W5N4B5_LEPOC	trim32	ENSLOCP00000015474	ENSLOCP00000021449	Transmembrane protein 173.	Tripartite motif containing 32.	0.767
W5NNI9_LEPOC	W5N4B5_LEPOC	ENSLOCP00000022198	ENSLOCP00000015474	Uncharacterized protein.	Transmembrane protein 173.	0.758
W5NNI9_LEPOC	rps27a	ENSLOCP00000022198	ENSLOCP00000019146	Uncharacterized protein.	Ribosomal protein S27a.	0.630
W5NNI9_LEPOC	trim32	ENSLOCP00000022198	ENSLOCP00000021449	Uncharacterized protein.	Tripartite motif containing 32.	0.701
W5NNI9_LEPOC	uba52	ENSLOCP00000022198	ENSLOCP00000002515	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.493
abi1	trim32	ENSLOCP00000009230	ENSLOCP00000021449	Abl interactor 1.	Tripartite motif containing 32.	0.594
pde9a	trim32	ENSLOCP00000004738	ENSLOCP00000021449	Phosphodiesterase.	Tripartite motif containing 32.	0.623
rps27a	W5N4B5_LEPOC	ENSLOCP00000019146	ENSLOCP00000015474	Ribosomal protein S27a.	Transmembrane protein 173.	0.765
rps27a	W5NNI9_LEPOC	ENSLOCP00000019146	ENSLOCP00000022198	Ribosomal protein S27a.	Uncharacterized protein.	0.630
rps27a	trim32	ENSLOCP00000019146	ENSLOCP00000021449	Ribosomal protein S27a.	Tripartite motif containing 32.	0.686
rps27a	trim8	ENSLOCP00000019146	ENSLOCP00000015609	Ribosomal protein S27a.	Tripartite motif containing 8a.	0.486
rps27a	uba52	ENSLOCP00000019146	ENSLOCP00000002515	Ribosomal protein S27a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
rps27a	ube2n	ENSLOCP00000019146	ENSLOCP00000018805	Ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family.	0.994
trim32	LOC102691117	ENSLOCP00000021449	ENSLOCP00000002520	Tripartite motif containing 32.	Phosphodiesterase.	0.623
trim32	W5M2C2_LEPOC	ENSLOCP00000021449	ENSLOCP00000002530	Tripartite motif containing 32.	Phosphodiesterase.	0.588
trim32	W5N4B5_LEPOC	ENSLOCP00000021449	ENSLOCP00000015474	Tripartite motif containing 32.	Transmembrane protein 173.	0.767