STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)    
Predicted Functional Partners:
LOC107076440
PSP domain-containing protein.
    
 0.999
sf3b1
Splicing factor 3b, subunit 1.
    
 0.999
sf3b3
Splicing factor 3b, subunit 3.
   
 0.999
sf3b6
Splicing factor 3b, subunit 6.
   
 0.999
sf3a2
Splicing factor 3a, subunit 2.
   
 0.998
sf3b4
Splicing factor 3b, subunit 4.
   
 0.998
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
sf3a1
Splicing factor 3a, subunit 1.
    
 0.996
W5MVP0_LEPOC
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
    
 0.996
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.