STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102693457Nuclear protein 1a. (57 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
      
 0.547
W5NJJ7_LEPOC
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
      
 0.536
W5MW59_LEPOC
Uncharacterized protein.
      
 0.529
W5MW67_LEPOC
RING-type domain-containing protein.
      
 0.529
clg8h3orf20
FAM194 domain-containing protein.
      
 0.527
W5LZQ3_LEPOC
Prothymosin alpha a.
    
 
 0.508
nsa2
NSA2 ribosome biogenesis homolog (S. cerevisiae).
    
 
 0.493
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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