STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NLZ1_LEPOCGrowth arrest-specific 1a. (267 aa)    
Predicted Functional Partners:
ihh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.914
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.914
W5MLT6_LEPOC
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.905
ptch2
Patched 2.
     
 0.898
ptch1
Patched 1.
     
 0.898
cdon
Cell adhesion associated, oncogene regulated.
    
 0.851
boc
BOC cell adhesion associated, oncogene regulated.
    
 0.851
W5N3U3_LEPOC
Si:dkey-88l16.3.
     
 0.821
W5MNC0_LEPOC
Low density lipoprotein receptor-related protein 2a.
     
 0.792
LOC102682997
Uncharacterized protein.
     
 0.792
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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