LOC102696339 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102696339

Olfactory receptor. (314 aa)

Predicted Functional Partners:

gng7

0.559

gnal

0.539

W5NMQ4_LEPOC

0.539

W5LZ17_LEPOC

0.494

gnb1

0.494

gnb3

0.494

W5N7N1_LEPOC

0.494

arrb1

0.486

sag

0.486

W5N6D1_LEPOC

0.486

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102696339	W5LZ17_LEPOC	ENSLOCP00000021682	ENSLOCP00000001374	Olfactory receptor.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.494
LOC102696339	W5N6D1_LEPOC	ENSLOCP00000021682	ENSLOCP00000016190	Olfactory receptor.	Arrestin, beta 2a.	0.486
LOC102696339	W5N7N1_LEPOC	ENSLOCP00000021682	ENSLOCP00000016640	Olfactory receptor.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.494
LOC102696339	W5NMQ4_LEPOC	ENSLOCP00000021682	ENSLOCP00000021913	Olfactory receptor.	Uncharacterized protein.	0.539
LOC102696339	arrb1	ENSLOCP00000021682	ENSLOCP00000003053	Olfactory receptor.	Arrestin, beta 1.	0.486
LOC102696339	gnal	ENSLOCP00000021682	ENSLOCP00000002598	Olfactory receptor.	Uncharacterized protein.	0.539
LOC102696339	gnb1	ENSLOCP00000021682	ENSLOCP00000007434	Olfactory receptor.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.494
LOC102696339	gnb3	ENSLOCP00000021682	ENSLOCP00000009443	Olfactory receptor.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.494
LOC102696339	gng7	ENSLOCP00000021682	ENSLOCP00000000805	Olfactory receptor.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.559
LOC102696339	sag	ENSLOCP00000021682	ENSLOCP00000011299	Olfactory receptor.	S-antigen; retina and pineal gland (arrestin) a.	0.486
W5LZ17_LEPOC	LOC102696339	ENSLOCP00000001374	ENSLOCP00000021682	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Olfactory receptor.	0.494
W5LZ17_LEPOC	W5N7N1_LEPOC	ENSLOCP00000001374	ENSLOCP00000016640	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.556
W5LZ17_LEPOC	W5NMQ4_LEPOC	ENSLOCP00000001374	ENSLOCP00000021913	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Uncharacterized protein.	0.892
W5LZ17_LEPOC	gnal	ENSLOCP00000001374	ENSLOCP00000002598	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Uncharacterized protein.	0.948
W5LZ17_LEPOC	gnb1	ENSLOCP00000001374	ENSLOCP00000007434	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.545
W5LZ17_LEPOC	gnb3	ENSLOCP00000001374	ENSLOCP00000009443	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.547
W5LZ17_LEPOC	gng7	ENSLOCP00000001374	ENSLOCP00000000805	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.941
W5N6D1_LEPOC	LOC102696339	ENSLOCP00000016190	ENSLOCP00000021682	Arrestin, beta 2a.	Olfactory receptor.	0.486
W5N7N1_LEPOC	LOC102696339	ENSLOCP00000016640	ENSLOCP00000021682	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	Olfactory receptor.	0.494
W5N7N1_LEPOC	W5LZ17_LEPOC	ENSLOCP00000016640	ENSLOCP00000001374	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.556