STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NMH6_LEPOCUncharacterized protein. (246 aa)    
Predicted Functional Partners:
tor1b
Torsin.
    
 
 0.755
W5M8L8_LEPOC
Si:dkey-34e4.1.
      
 0.599
nos1ap
Nitric oxide synthase 1 (neuronal) adaptor protein a.
      
 0.599
W5M4G1_LEPOC
Torsin family 2, member A.
    
 
 0.574
rhof
Ras homolog family member F.
    
  0.545
tor3a
Torsin family 3, member A.
   
 
 0.520
lmnb2
Lamin B2; Belongs to the intermediate filament family.
    
 0.493
lmnb1
Lamin B1; Belongs to the intermediate filament family.
    
 0.493
LOC102688505
Lamin L3; Belongs to the intermediate filament family.
    
 0.493
LOC107075796
LTD domain-containing protein.
    
  0.470
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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