STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102686492Histone H2A; Belongs to the histone H2A family. (141 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.995
LOC102699233
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 
 0.988
W5NLL5_LEPOC
Histone H2B; Belongs to the histone H2B family.
 
 0.977
W5MJK0_LEPOC
Histone H2B; Belongs to the histone H2B family.
 
 0.975
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.907
W5N7D6_LEPOC
Uncharacterized protein.
    
 0.907
rps27a
Ribosomal protein S27a.
   
  0.906
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.891
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.889
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.887
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.