STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASCL5Achaete-scute family bHLH transcription factor 5. (213 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
    
 0.603
W5MFW8_LEPOC
Transcription factor 3a.
    
 0.603
tcf12
Transcription factor 12.
    
 0.603
ldb2
LIM domain binding 2a.
    
 0.541
ldb1
LIM domain binding 1a.
    
 0.541
bhlhe23
Basic helix-loop-helix family, member e23.
   
 
 0.421
gata4
GATA binding protein 4.
   
 0.414
gata6
GATA binding protein 6.
   
 0.414
trps1
Trichorhinophalangeal syndrome I.
   
 0.414
W5MFH6_LEPOC
GATA binding protein 5.
   
 0.414
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.