STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NN95_LEPOCChromo domain-containing protein. (273 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
    
 0.929
W5NM24_LEPOC
Reverse transcriptase domain-containing protein.
 
     0.888
W5NL88_LEPOC
Uncharacterized protein.
 
     0.845
W5NNM2_LEPOC
Uncharacterized protein.
 
     0.792
W5MJC8_LEPOC
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
 
 0.730
W5NNB8_LEPOC
RT_RNaseH_2 domain-containing protein.
 
     0.582
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.529
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.512
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.510
W5N942_LEPOC
Integrase_H2C2 domain-containing protein.
  
 
   0.509
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.