LOC102694668 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102694668

Odorant receptor, family F, subfamily 116, member 1. (311 aa)

Predicted Functional Partners:

gng7

0.709

gnal

0.631

W5NMQ4_LEPOC

0.631

arrb1

0.564

sag

0.564

W5N6D1_LEPOC

0.564

W5NDI0_LEPOC

0.564

W5LZ17_LEPOC

0.554

gnb1

0.554

gnb3

0.554

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102694668	W5LZ17_LEPOC	ENSLOCP00000022132	ENSLOCP00000001374	Odorant receptor, family F, subfamily 116, member 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.554
LOC102694668	W5N6D1_LEPOC	ENSLOCP00000022132	ENSLOCP00000016190	Odorant receptor, family F, subfamily 116, member 1.	Arrestin, beta 2a.	0.564
LOC102694668	W5NDI0_LEPOC	ENSLOCP00000022132	ENSLOCP00000018689	Odorant receptor, family F, subfamily 116, member 1.	Arrestin_N domain-containing protein.	0.564
LOC102694668	W5NMQ4_LEPOC	ENSLOCP00000022132	ENSLOCP00000021913	Odorant receptor, family F, subfamily 116, member 1.	Uncharacterized protein.	0.631
LOC102694668	arrb1	ENSLOCP00000022132	ENSLOCP00000003053	Odorant receptor, family F, subfamily 116, member 1.	Arrestin, beta 1.	0.564
LOC102694668	gnal	ENSLOCP00000022132	ENSLOCP00000002598	Odorant receptor, family F, subfamily 116, member 1.	Uncharacterized protein.	0.631
LOC102694668	gnb1	ENSLOCP00000022132	ENSLOCP00000007434	Odorant receptor, family F, subfamily 116, member 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.554
LOC102694668	gnb3	ENSLOCP00000022132	ENSLOCP00000009443	Odorant receptor, family F, subfamily 116, member 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.554
LOC102694668	gng7	ENSLOCP00000022132	ENSLOCP00000000805	Odorant receptor, family F, subfamily 116, member 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.709
LOC102694668	sag	ENSLOCP00000022132	ENSLOCP00000011299	Odorant receptor, family F, subfamily 116, member 1.	S-antigen; retina and pineal gland (arrestin) a.	0.564
W5LZ17_LEPOC	LOC102694668	ENSLOCP00000001374	ENSLOCP00000022132	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Odorant receptor, family F, subfamily 116, member 1.	0.554
W5LZ17_LEPOC	W5NMQ4_LEPOC	ENSLOCP00000001374	ENSLOCP00000021913	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Uncharacterized protein.	0.892
W5LZ17_LEPOC	gnal	ENSLOCP00000001374	ENSLOCP00000002598	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Uncharacterized protein.	0.948
W5LZ17_LEPOC	gnb1	ENSLOCP00000001374	ENSLOCP00000007434	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.545
W5LZ17_LEPOC	gnb3	ENSLOCP00000001374	ENSLOCP00000009443	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.547
W5LZ17_LEPOC	gng7	ENSLOCP00000001374	ENSLOCP00000000805	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.941
W5N6D1_LEPOC	LOC102694668	ENSLOCP00000016190	ENSLOCP00000022132	Arrestin, beta 2a.	Odorant receptor, family F, subfamily 116, member 1.	0.564
W5NDI0_LEPOC	LOC102694668	ENSLOCP00000018689	ENSLOCP00000022132	Arrestin_N domain-containing protein.	Odorant receptor, family F, subfamily 116, member 1.	0.564
W5NMQ4_LEPOC	LOC102694668	ENSLOCP00000021913	ENSLOCP00000022132	Uncharacterized protein.	Odorant receptor, family F, subfamily 116, member 1.	0.631
W5NMQ4_LEPOC	W5LZ17_LEPOC	ENSLOCP00000021913	ENSLOCP00000001374	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.892