STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dexiDexi homolog (mouse). (89 aa)    
Predicted Functional Partners:
RD3L
Retinal degeneration 3 like.
      
 0.568
clec16a
C-type lectin domain containing 16A.
      
 0.541
GPR139
G protein-coupled receptor 139.
      
 0.535
W5MG54_LEPOC
MAP6 domain containing 1.
      
 0.506
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.506
W5N199_LEPOC
Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.
      
 0.505
mrps28
Mitochondrial ribosomal protein S28.
      
 0.497
rfxap
Regulatory factor X-associated protein.
   
  
 0.449
kctd2
Potassium channel tetramerization domain containing 2.
   
    0.437
W5MGD2_LEPOC
Sb:cb649.
      
 0.420
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.