STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NNV0_LEPOCSi:dkey-157g16.6. (142 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.973
ist1
IST1 factor associated with ESCRT-III.
    
 0.875
chmp3
Charged multivesicular body protein 3.
   
 0.844
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.814
yod1
YOD1 deubiquitinase.
   
 0.775
faap100
Si:dkey-57h18.1.
    
 0.756
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.756
LOC102687880
N-ethylmaleimide-sensitive factor attachment protein, alpha b.
    
 0.750
LOC102683706
N-ethylmaleimide-sensitive factor attachment protein, beta a.
    
 0.750
ubxn6
UBX domain protein 6.
    
 0.724
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.