STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_024627Uncharacterized protein. (1282 aa)    
Predicted Functional Partners:
DCAR_025996
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.945
DCAR_012521
WRKY domain-containing protein.
      
 0.880
DCAR_005872
WRKY domain-containing protein.
      
 0.880
DCAR_007343
WRKY domain-containing protein.
      
 0.880
DCAR_015264
AP2/ERF domain-containing protein.
      
 0.879
DCAR_009952
Uncharacterized protein.
    
 0.843
DCAR_014263
RPOL4c domain-containing protein.
    
 0.830
DCAR_001661
Homeobox domain-containing protein.
      
 0.827
DCAR_012421
RPOLD domain-containing protein.
    
 0.806
DCAR_021998
RPOLD domain-containing protein.
    
 0.806
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.