STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_017559Tr-type G domain-containing protein. (1024 aa)    
Predicted Functional Partners:
DCAR_008951
RIBOSOMAL_L9 domain-containing protein.
   
 0.930
DCAR_006800
RF_PROK_I domain-containing protein.
  
 0.928
DCAR_023951
Ribosomal_L18_c domain-containing protein.
   
 
 0.927
DCAR_024228
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.926
DCAR_008779
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.910
DCAR_019610
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 0.906
DCAR_014524
Uncharacterized protein.
  
 0.905
rps14
Ribosomal protein S14.
  
 0.905
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.900
DCAR_021233
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
  
 0.898
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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