DCAR_021203 protein (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DCAR_021203

EF-hand domain-containing protein. (122 aa)

Predicted Functional Partners:

DCAR_003431

0.903

DCAR_000973

0.886

DCAR_027134

0.860

DCAR_011978

0.697

DCAR_007888

0.651

DCAR_027872

0.646

CMK-1

0.639

DCAR_002182

0.630

DCAR_002738

0.612

DCAR_015555

0.609

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMK-1	DCAR_021203	A0A166DP05	A0A161ZU40	4-(Cytidine 5-phospho)-2-C-methyl-D-erithritol kinase.	EF-hand domain-containing protein.	0.639
DCAR_000973	DCAR_021203	A0A166G157	A0A161ZU40	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	EF-hand domain-containing protein.	0.886
DCAR_002182	DCAR_002738	A0A162AIC8	A0A166HCF6	CYCLIN domain-containing protein; Belongs to the cyclin family.	Helicase ATP-binding domain-containing protein.	0.994
DCAR_002182	DCAR_003431	A0A162AIC8	A0A166I5M2	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.900
DCAR_002182	DCAR_007888	A0A162AIC8	A0A166EWA8	CYCLIN domain-containing protein; Belongs to the cyclin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.820
DCAR_002182	DCAR_015555	A0A162AIC8	A0A165A872	CYCLIN domain-containing protein; Belongs to the cyclin family.	General transcription factor IIH subunit.	0.994
DCAR_002182	DCAR_021203	A0A162AIC8	A0A161ZU40	CYCLIN domain-containing protein; Belongs to the cyclin family.	EF-hand domain-containing protein.	0.630
DCAR_002182	DCAR_027872	A0A162AIC8	A0A175YLW4	CYCLIN domain-containing protein; Belongs to the cyclin family.	CPSF_A domain-containing protein.	0.894
DCAR_002738	DCAR_002182	A0A166HCF6	A0A162AIC8	Helicase ATP-binding domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.994
DCAR_002738	DCAR_003431	A0A166HCF6	A0A166I5M2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.959
DCAR_002738	DCAR_007888	A0A166HCF6	A0A166EWA8	Helicase ATP-binding domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.860
DCAR_002738	DCAR_015555	A0A166HCF6	A0A165A872	Helicase ATP-binding domain-containing protein.	General transcription factor IIH subunit.	0.994
DCAR_002738	DCAR_021203	A0A166HCF6	A0A161ZU40	Helicase ATP-binding domain-containing protein.	EF-hand domain-containing protein.	0.612
DCAR_002738	DCAR_027872	A0A166HCF6	A0A175YLW4	Helicase ATP-binding domain-containing protein.	CPSF_A domain-containing protein.	0.900
DCAR_003431	DCAR_002182	A0A166I5M2	A0A162AIC8	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.900
DCAR_003431	DCAR_002738	A0A166I5M2	A0A166HCF6	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.959
DCAR_003431	DCAR_007888	A0A166I5M2	A0A166EWA8	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.897
DCAR_003431	DCAR_015555	A0A166I5M2	A0A165A872	Uncharacterized protein.	General transcription factor IIH subunit.	0.950
DCAR_003431	DCAR_021203	A0A166I5M2	A0A161ZU40	Uncharacterized protein.	EF-hand domain-containing protein.	0.903
DCAR_003431	DCAR_027872	A0A166I5M2	A0A175YLW4	Uncharacterized protein.	CPSF_A domain-containing protein.	0.904

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About