STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_011929RNA helicase. (587 aa)    
Predicted Functional Partners:
DCAR_016871
Uncharacterized protein.
   
 0.975
DCAR_026429
CBF domain-containing protein.
   
 
 0.961
DCAR_024389
Uncharacterized protein.
   
 
 0.957
DCAR_006461
Uncharacterized protein.
   
 
 0.957
DCAR_004695
Uncharacterized protein.
  
  
0.947
DCAR_001836
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.945
DCAR_010055
RNA helicase.
  
  
0.930
DCAR_024298
Uncharacterized protein.
  
 
0.930
DCAR_027042
PUM-HD domain-containing protein.
   
 
 0.927
DCAR_002684
WD_REPEATS_REGION domain-containing protein.
   
 0.921
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.