STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_016746PseudoU_synth_1 domain-containing protein. (336 aa)    
Predicted Functional Partners:
DCAR_002720
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.860
DCAR_011042
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.678
DCAR_012421
RPOLD domain-containing protein.
  
  
 0.635
DCAR_021998
RPOLD domain-containing protein.
  
  
 0.635
DCAR_013247
RPOLD domain-containing protein.
  
  
 0.635
DCAR_004547
Uncharacterized protein.
   
 
 0.625
DCAR_006316
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.616
DCAR_018592
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.606
DCAR_001358
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.606
DCAR_005761
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.606
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.