STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_014357Alginate_lyase2 domain-containing protein. (215 aa)    
Predicted Functional Partners:
DCAR_025862
Uncharacterized protein.
  
     0.481
DCAR_004239
BHLH domain-containing protein.
  
     0.463
DCAR_000702
Gnk2-homologous domain-containing protein.
  
     0.449
DCAR_023729
Uncharacterized protein.
  
     0.442
DCAR_013871
RING-type E3 ubiquitin transferase.
  
     0.439
DCAR_003379
GUB_WAK_bind domain-containing protein.
  
     0.438
DCAR_008182
Uncharacterized protein.
  
     0.431
DCAR_015019
GUB_WAK_bind domain-containing protein.
  
     0.419
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.