DCAR_013251 protein (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DCAR_013251

Uncharacterized protein. (366 aa)

Predicted Functional Partners:

DCAR_008040

0.892

DCAR_027497

0.892

DCAR_024549

0.848

DCAR_029387

0.813

DCAR_021233

0.802

DCAR_025978

0.801

DCAR_024376

0.801

DCAR_022335

0.801

DCAR_013886

0.801

DCAR_009645

0.801

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_008040	DCAR_009645	A0A162AXD3	A0A162AHA6	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_008040	DCAR_013251	A0A162AXD3	A0A165YYC3	Uncharacterized protein.	Uncharacterized protein.	0.892
DCAR_008040	DCAR_013886	A0A162AXD3	A0A162ABC3	Uncharacterized protein.	Uncharacterized protein.	0.824
DCAR_008040	DCAR_021233	A0A162AXD3	A0A161ZU20	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.980
DCAR_008040	DCAR_022335	A0A162AXD3	A0A161ZU84	Uncharacterized protein.	Uncharacterized protein.	0.814
DCAR_008040	DCAR_024376	A0A162AXD3	A0A161ZJQ2	Uncharacterized protein.	Uncharacterized protein.	0.814
DCAR_008040	DCAR_024549	A0A162AXD3	A0A164TEA4	Uncharacterized protein.	Uncharacterized protein.	0.814
DCAR_008040	DCAR_025978	A0A162AXD3	A0A161X8L3	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_008040	DCAR_027497	A0A162AXD3	A0A175YPL9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.983
DCAR_008040	DCAR_029387	A0A162AXD3	A0A175YDQ4	Uncharacterized protein.	Uncharacterized protein.	0.837
DCAR_009645	DCAR_008040	A0A162AHA6	A0A162AXD3	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_013251	A0A162AHA6	A0A165YYC3	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_013886	A0A162AHA6	A0A162ABC3	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_021233	A0A162AHA6	A0A161ZU20	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.801
DCAR_009645	DCAR_022335	A0A162AHA6	A0A161ZU84	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_024376	A0A162AHA6	A0A161ZJQ2	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_024549	A0A162AHA6	A0A164TEA4	Uncharacterized protein.	Uncharacterized protein.	0.807
DCAR_009645	DCAR_025978	A0A162AHA6	A0A161X8L3	Uncharacterized protein.	Uncharacterized protein.	0.801
DCAR_009645	DCAR_027497	A0A162AHA6	A0A175YPL9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.801
DCAR_009645	DCAR_029387	A0A162AHA6	A0A175YDQ4	Uncharacterized protein.	Uncharacterized protein.	0.801

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About