DCAR_011968 protein (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DCAR_011968

Uncharacterized protein. (1402 aa)

Predicted Functional Partners:

DCAR_013722

0.886

DCAR_015239

0.875

DCAR_019081

0.874

DCAR_016825

0.863

DCAR_011585

0.862

DCAR_022946

0.861

DCAR_022184

0.860

DCAR_017293

0.835

DCAR_002684

0.828

DCAR_007090

0.812

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_002684	DCAR_011968	A0A166HB17	A0A166C2V6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.828
DCAR_002684	DCAR_013722	A0A166HB17	A0A165YA03	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.949
DCAR_002684	DCAR_015239	A0A166HB17	A0A165WEW7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
DCAR_002684	DCAR_016825	A0A166HB17	A0A162A187	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
DCAR_002684	DCAR_017293	A0A166HB17	A0A164Y6G3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
DCAR_002684	DCAR_019081	A0A166HB17	A0A164ZF57	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.998
DCAR_002684	DCAR_022184	A0A166HB17	A0A164VJT1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
DCAR_007090	DCAR_011585	A0A162AUX5	A0A166BSY9	WD_REPEATS_REGION domain-containing protein.	MI domain-containing protein.	0.989
DCAR_007090	DCAR_011968	A0A162AUX5	A0A166C2V6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.812
DCAR_007090	DCAR_016825	A0A162AUX5	A0A162A187	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.438
DCAR_007090	DCAR_022946	A0A162AUX5	A0A164V1Q4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.990
DCAR_011585	DCAR_007090	A0A166BSY9	A0A162AUX5	MI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.989
DCAR_011585	DCAR_011968	A0A166BSY9	A0A166C2V6	MI domain-containing protein.	Uncharacterized protein.	0.862
DCAR_011585	DCAR_013722	A0A166BSY9	A0A165YA03	MI domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.418
DCAR_011585	DCAR_022946	A0A166BSY9	A0A164V1Q4	MI domain-containing protein.	Uncharacterized protein.	0.993
DCAR_011968	DCAR_002684	A0A166C2V6	A0A166HB17	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.828
DCAR_011968	DCAR_007090	A0A166C2V6	A0A162AUX5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.812
DCAR_011968	DCAR_011585	A0A166C2V6	A0A166BSY9	Uncharacterized protein.	MI domain-containing protein.	0.862
DCAR_011968	DCAR_013722	A0A166C2V6	A0A165YA03	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.886
DCAR_011968	DCAR_015239	A0A166C2V6	A0A165WEW7	Uncharacterized protein.	Uncharacterized protein.	0.875

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2023

Credits

Access

Info

About