STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_007803AA_TRNA_LIGASE_II_ALA domain-containing protein. (236 aa)    
Predicted Functional Partners:
DCAR_013162
TPR_REGION domain-containing protein.
   
 0.944
DCAR_004136
Uncharacterized protein.
   
 0.942
DCAR_016941
TPR_REGION domain-containing protein.
   
 0.941
DCAR_025950
DOC domain-containing protein.
    
 0.939
DCAR_025400
RING-type domain-containing protein.
    
 0.938
DCAR_027428
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.936
DCAR_022835
Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
0.931
DCAR_027096
Uncharacterized protein.
   
 0.886
DCAR_007019
HORMA domain-containing protein.
    
 0.848
DCAR_011823
APC1_C domain-containing protein.
    
 0.834
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.