STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_004606Ubiquitin carboxyl-terminal hydrolase. (233 aa)    
Predicted Functional Partners:
DCAR_025254
PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.
    
 0.838
DCAR_005390
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.838
DCAR_020321
PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.
    
 0.838
DCAR_025250
Ubiquitin-like domain-containing protein.
   
 0.836
DCAR_021185
Uncharacterized protein.
    
 0.834
DCAR_030615
Uncharacterized protein.
    
 0.834
DCAR_024593
Uncharacterized protein.
   
 0.773
DCAR_027166
E2_bind domain-containing protein.
   
 0.773
DCAR_027230
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 
 0.751
DCAR_016110
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
   
 
 0.748
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.