STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAR_030035Uncharacterized protein. (90 aa)    
Predicted Functional Partners:
DCAR_025596
N-acetyltransferase domain-containing protein.
   
 
 0.939
DCAR_007266
WD_REPEATS_REGION domain-containing protein.
    
 
 0.893
DCAR_027666
Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.
    
 
 0.836
DCAR_000603
Uncharacterized protein.
   
    0.714
DCAR_014069
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.677
DCAR_011444
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.677
DCAR_029748
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.677
DCAR_016825
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.627
DCAR_003438
Uncharacterized protein.
   
 
 0.615
DCAR_021834
UPF0020 domain-containing protein.
   
  
 0.599
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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