STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCYELycopene epsilon-cyclase. (550 aa)    
Predicted Functional Partners:
CRTISO
Carotenoid isomerase.
     
 0.991
ZDS-1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
   
 
 0.990
ZDS2
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
   
 
 0.990
LCYB1
Lycopene beta-cyclase.
  
  
0.921
Z-ISO
Zeta-carotene isomerase.
      
 0.919
ZEP
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
      
 0.918
BCH-1
Beta-carotene hydroxylase; Belongs to the sterol desaturase family.
      
 0.890
BCH-2
Beta-carotene hydroxylase; Belongs to the sterol desaturase family.
      
 0.889
DCAR_015695
FAD_binding_3 domain-containing protein.
      
 0.886
CCD7
Carotenoid cleavage dioxygenase.
      
 0.863
Your Current Organism:
Daucus carota
NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus
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