STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000000038Elongin B. (114 aa)    
Predicted Functional Partners:
ENSCHAP00000022879
UBX domain protein 7.
    
 0.995
ENSCHAP00000004468
Cullin 2.
    
 0.994
cul5
Cullin 5.
    
 0.993
rbx1
Ring-box 1.
   
 0.993
rnf7
Ring finger protein 7.
   
 0.984
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
     
 0.983
ENSCHAP00000048980
annotation not available
   
 0.980
LOC105900538
Transcription elongation factor B polypeptide 1-like.
   
 0.980
ENSCHAP00000032857
Suppressor of cytokine signaling 2.
    
 0.974
ENSCHAP00000007825
NEDD8 ubiquitin like modifier, like.
   
 0.973
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.