STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000000059annotation not available (848 aa)    
Predicted Functional Partners:
ENSCHAP00000024796
BRCA1/BRCA2-containing complex, subunit 3.
    
 0.823
babam2
BRISC and BRCA1 A complex member 2.
    
 0.823
babam1
BRISC and BRCA1 A complex member 1.
    
 0.822
ENSCHAP00000006565
annotation not available
    
 0.770
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
  0.736
rps27a
Ribosomal protein S27a.
    
  0.717
ENSCHAP00000030291
Ubiquitin B.
    
  0.714
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
 0.695
ENSCHAP00000029214
Recombination activating gene 2.
   
 0.611
ENSCHAP00000027876
Mediator of DNA damage checkpoint 1.
    
 0.597
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.