STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000000060annotation not available (606 aa)    
Predicted Functional Partners:
ENSCHAP00000000043
annotation not available
  
  
 
0.819
ENSCHAP00000000058
annotation not available
  
  
 
0.819
LOC105902927
Perforin-1-like.
  
  
 
0.790
LOC105913026
Perforin-1-like.
  
  
 
0.620
LOC105913016
Perforin-1-like.
  
  
 
0.617
rps27a
Ribosomal protein S27a.
    
  0.477
ENSCHAP00000007509
Transmembrane protein 179B.
  
 
  0.476
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.476
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.461
ENSCHAP00000030857
annotation not available
    
  0.461
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.