STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000000333annotation not available (232 aa)    
Predicted Functional Partners:
LOC105904511
Nucleosome assembly protein 1-like 4.
   
 
 0.701
ENSCHAP00000031804
Nucleosome assembly protein 1-like 4b.
   
 
 0.701
nap1l1
Nucleosome assembly protein 1 like 1.
   
 
 0.700
tbp
TATA-box binding protein.
    
 
 0.654
ENSCHAP00000031975
TATA box binding protein like 2.
    
 
 0.654
umps
Uridine monophosphate synthetase.
   
 
  0.636
H2AZ1
Histone H2A.Z.
    
 
 0.624
LOC105889415
Histone H2A.V.
    
 
 0.624
LOC105889415-2
Histone H2A.V.
    
 
 0.624
ENSCHAP00000002546
RAN, member RAS oncogene family.
   
 
 0.611
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.