STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105906738Sodium-dependent lysophosphatidylcholine symporter 1-like. (552 aa)    
Predicted Functional Partners:
ENSCHAP00000009497
Thymidylate synthetase.
    
  0.672
ENSCHAP00000041850
Thymidine kinase 1, soluble.
    
  0.653
cstf3
Cleavage stimulation factor subunit 3.
    
  0.652
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.641
gapdhs
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.
    
 0.641
ENSCHAP00000052367
annotation not available
    
 0.641
ENSCHAP00000049610
annotation not available
    
  0.590
ENSCHAP00000058691
NME/NM23 family member 8.
    
  0.590
rrm1
Ribonucleotide reductase catalytic subunit M1.
    
  0.589
LOC105894955
Nucleoside diphosphate kinase, mitochondrial-like.
    
  0.566
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.