STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892542Very long-chain acyl-CoA synthetase-like. (636 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
   
 0.910
bbs9
Bardet-Biedl syndrome 9.
   
 0.908
bbs7
Bardet-Biedl syndrome 7.
   
 0.908
ENSCHAP00000033421
Tetratricopeptide repeat domain 8.
    
 0.893
ENSCHAP00000051136
Bardet-Biedl syndrome 4.
   
 0.884
LOC105895092
Non-specific lipid-transfer protein-like.
   
 
 0.878
ENSCHAP00000051341
Sterol carrier protein 2a.
   
 
 0.878
LOC105889037
Very long-chain acyl-CoA synthetase-like.
  
  
 
0.850
ENSCHAP00000012634
BBSome interacting protein 1.
    
 0.832
ENSCHAP00000014797
Kinesin family member 25.
    
 0.788
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.