STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000000659Otoferlin b. (1690 aa)    
Predicted Functional Partners:
ENSCHAP00000008118
Vesicle-associated membrane protein 2.
     
 0.532
ENSCHAP00000018350
annotation not available
    
 0.523
ENSCHAP00000055532
annotation not available
    
 0.523
slc17a8
Solute carrier family 17 member 8.
     
 0.518
ENSCHAP00000048391
annotation not available
     
 0.515
ENSCHAP00000038996
Annexin A1a.
   
 0.446
ENSCHAP00000040258
Annexin A2a.
   
 0.446
CAV3
Caveolin 3.
   
 0.415
LOC105910302
Caveolin-1-like.
   
 0.415
ENSCHAP00000011347
Solute carrier family 17 member 7b.
     
 0.408
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.