STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105899192Stress-associated endoplasmic reticulum protein 1. (66 aa)    
Predicted Functional Partners:
sec61b
SEC61 translocon beta subunit.
   
 
 0.718
ENSCHAP00000012689
Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.
    
  0.644
ENSCHAP00000019590
annotation not available
    
  0.644
ENSCHAP00000021488
annotation not available
    
  0.590
ENSCHAP00000021533
annotation not available
    
  0.590
SEC61G
Protein transport protein Sec61 subunit gamma-like.
   
 
  0.545
sec61g
SEC61 translocon gamma subunit.
   
 
  0.545
ENSCHAP00000024071
Syntaxin 5A.
     
 0.514
LOC105900350
Syntaxin-5-like.
     
 0.514
ENSCHAP00000007628
Cytochrome b5 type A (microsomal).
     
 0.448
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.