STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001039Ferric-chelate reductase 1-like. (284 aa)    
Predicted Functional Partners:
LOC105904489
39S ribosomal protein L23, mitochondrial-like.
   
 
 0.946
ENSCHAP00000006053
Mitochondrial ribosomal protein L46.
   
   0.933
mrpl3
Mitochondrial ribosomal protein L3.
   
   0.930
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.918
ENSCHAP00000046381
Mitochondrial ribosomal protein L27.
   
 
 0.911
ENSCHAP00000055955
Mitochondrial ribosomal protein L47.
   
 
 0.911
ENSCHAP00000010615
Mitochondrial ribosomal protein L4.
   
 
 0.909
ENSCHAP00000001326
Mitochondrial ribosomal protein L22.
   
 
 0.907
mrpl16
Mitochondrial ribosomal protein L16.
   
 
 0.907
mrps15
Mitochondrial ribosomal protein S15.
   
   0.899
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.