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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpeSmall nuclear ribonucleoprotein polypeptide E. (94 aa)    
Predicted Functional Partners:
ENSCHAP00000001726
Organic solute carrier partner 1a.
   
 0.999
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.999
sf3b6
Splicing factor 3b subunit 6.
   
  0.999
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.999
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
LOC105889118
Small nuclear ribonucleoprotein Sm D3-like.
   
 0.999
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.999
prpf19
pre-mRNA processing factor 19.
   
 0.999
cdc5l
Cell division cycle 5 like.
   
  0.999
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.