STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001049annotation not available (659 aa)    
Predicted Functional Partners:
ENSCHAP00000003239
annotation not available
   
 0.988
ENSCHAP00000059765
RPGRIP1 like.
    
 0.957
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.934
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.927
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.927
dctn2
Dynactin subunit 2.
    
 0.828
ENSCHAP00000016490
Intersectin 2b.
     
 0.825
ENSCHAP00000057857
Intersectin 2a.
     
 0.825
ENSCHAP00000040099
Actin related protein 2/3 complex, subunit 4.
   
 0.819
ruvbl1
RuvB like AAA ATPase 1.
    
 0.814
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.