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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001059Si:dkey-72l14.4. (355 aa)    
Predicted Functional Partners:
borcs8
BLOC-1 related complex subunit 8.
   
 0.987
ENSCHAP00000050322
BLOC-1 related complex subunit 5.
    
 0.981
borcs7
BLOC-1 related complex subunit 7.
    
 0.981
snapin
SNAP associated protein.
   
 0.977
ENSCHAP00000061057
Biogenesis of lysosomal organelles complex-1, subunit 2.
    
 0.977
crebl2
cAMP responsive element binding protein like 2.
    
 0.933
lamtor4
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.
    
 
 0.526
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
 
 0.516
lamtor3
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.
    
 
 0.511
mpdu1
mannose-P-dolichol utilization defect 1.
      
 0.444
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.