STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001155Nucleoporin 42. (439 aa)    
Predicted Functional Partners:
gle1
GLE1 RNA export mediator.
    
 0.988
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.966
ENSCHAP00000036131
Achalasia, adrenocortical insufficiency, alacrimia.
    
 0.934
ENSCHAP00000006895
annotation not available
    
 0.924
ENSCHAP00000024896
Nucleoporin 88.
     
 0.909
ENSCHAP00000040692
Ribonucleic acid export 1.
    
 0.906
nup35
Nucleoporin 35.
    
 0.892
ENSCHAP00000004497
Nucleoporin 50.
     
 0.883
ENSCHAP00000041910
annotation not available
    
 0.878
nup93
Nucleoporin 93.
     
 0.875
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.