STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001156Selenoprotein J. (321 aa)    
Predicted Functional Partners:
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.972
ENSCHAP00000019780
SAGA complex associated factor 29.
    
 0.970
taf10
TATA-box binding protein associated factor 10.
    
 0.969
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
   
 0.968
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.967
taf6l
TATA-box binding protein associated factor 6 like.
    
 0.931
ENSCHAP00000038231
Ataxin 7-like 2b.
    
 0.931
taf6
TATA-box binding protein associated factor 6.
    
 0.931
ENSCHAP00000058708
Ataxin 7.
    
 0.931
taf5
TATA-box binding protein associated factor 5.
   
 0.930
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.