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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001166annotation not available (177 aa)    
Predicted Functional Partners:
ENSCHAP00000022535
Zinc finger CCCH-type containing 14.
    
 
 0.889
cstf3
Cleavage stimulation factor subunit 3.
   
 0.838
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
    
 0.770
ENSCHAP00000048221
WD repeat domain 82.
   
 0.763
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.734
ENSCHAP00000022226
Symplekin.
   
 0.729
clp1
Cleavage and polyadenylation factor I subunit 1.
     
 0.723
ENSCHAP00000005400
Zinc finger CCCH-type containing 4.
    
 0.666
ENSCHAP00000041576
Zinc finger CCCH-type containing 6.
    
 0.666
zc3h3
Zinc finger CCCH-type containing 3.
    
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.