STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001204Eukaryotic translation termination factor 1b. (450 aa)    
Predicted Functional Partners:
abce1
ATP binding cassette subfamily E member 1.
   
 
 0.989
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
 0.975
gspt1
G1 to S phase transition 1.
   
 0.937
LOC105899964
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like.
   
 0.937
ENSCHAP00000043280
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 
 0.933
rpsa
Ribosomal protein SA.
   
 0.910
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
   
 0.895
rps2
Ribosomal protein S2.
   
 0.884
rpl12
Ribosomal protein L12.
  
 0.878
rps3
Ribosomal protein S3.
   
 0.873
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.