STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001228Sec1 family domain containing 2. (691 aa)    
Predicted Functional Partners:
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
 
  0.925
stx18
Syntaxin 18.
    
 
 0.908
ENSCHAP00000004239
RAD50 interactor 1.
   
 
 0.907
ENSCHAP00000009396
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.840
vps33b
VPS33B late endosome and lysosome associated.
   
 
  0.832
ENSCHAP00000024660
VPS33A core subunit of CORVET and HOPS complexes.
   
 
  0.827
ENSCHAP00000024505
Sec1 family domain containing 1.
    
 
 0.783
ENSCHAP00000017422
NBAS subunit of NRZ tethering complex.
    
 
 0.772
ENSCHAP00000018322
annotation not available
    
 
 0.772
ENSCHAP00000018339
annotation not available
    
 
 0.737
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.