STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcl7aBAF chromatin remodeling complex subunit BCL7A. (202 aa)    
Predicted Functional Partners:
smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
   
 0.974
smarcd2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.
   
 0.958
ENSCHAP00000028991
annotation not available
   
 0.944
ENSCHAP00000028698
AT rich interactive domain 2 (ARID, RFX-like).
    
 0.940
brd7
Bromodomain containing 7.
   
 0.915
ENSCHAP00000006069
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.914
ENSCHAP00000008103
annotation not available
    
 0.914
SS18L1
SS18L1 subunit of BAF chromatin remodeling complex.
    
 0.914
ss18
SS18 subunit of BAF chromatin remodeling complex.
    
 0.914
ENSCHAP00000009450
Polybromo 1, like.
    
 0.888
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.