STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001280Syntaxin 17. (285 aa)    
Predicted Functional Partners:
ENSCHAP00000011416
Synaptosome associated protein 29.
    
 0.999
ENSCHAP00000036865
VPS39 subunit of HOPS complex.
   
 0.998
ENSCHAP00000007653
VPS41 subunit of HOPS complex.
    
 0.997
ENSCHAP00000014840
Vacuolar protein sorting 16 homolog.
    
 0.994
ENSCHAP00000015866
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.994
ENSCHAP00000015878
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.994
vamp7
Vesicle associated membrane protein 7.
   
 0.992
gosr1
Golgi SNAP receptor complex member 1.
   
 0.992
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.992
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.991
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.