STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001290Autocrine motility factor receptor a. (639 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.993
ENSCHAP00000014943
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.984
fam8a1
Family with sequence similarity 8 member A1.
    
 0.969
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
    
 0.967
ENSCHAP00000038625
OS9 endoplasmic reticulum lectin.
   
 0.967
LOC105901173
Transitional endoplasmic reticulum ATPase.
    
 0.967
ENSCHAP00000049811
Endoplasmic reticulum lectin 1.
   
 0.967
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.959
ENSCHAP00000023514
Si:dkey-24p1.6.
   
 0.959
ENSCHAP00000030291
Ubiquitin B.
    
 0.959
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.