STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888656Histone H1-like. (213 aa)    
Predicted Functional Partners:
ENSCHAP00000005035
Replication protein A2.
    
 0.642
stn1
STN1 subunit of CST complex.
    
 0.642
ENSCHAP00000035772
annotation not available
    
 0.642
ENSCHAP00000053724
SAS-6 centriolar assembly protein.
    
 0.642
kpnb1
Karyopherin subunit beta 1.
    
   0.571
ENSCHAP00000061282
annotation not available
     
 0.505
H2AZ1
Histone H2A.Z.
   
 0.438
LOC105889415
Histone H2A.V.
   
 0.438
LOC105889415-2
Histone H2A.V.
   
 0.438
ENSCHAP00000000997
annotation not available
   
 0.435
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.