STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000001372Trafficking regulator of GLUT4 (SLC2A4) 1a. (185 aa)    
Predicted Functional Partners:
ENSCHAP00000033010
Synaptosome associated protein 47.
    
 0.614
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
ENSCHAP00000041531
Ribosomal protein L36A.
    
 0.583
tmem59l
Transmembrane protein 59 like.
    
 
 0.562
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.554
lrrc42
Leucine rich repeat containing 42.
      
 0.540
ENSCHAP00000039785
Basic helix-loop-helix family, member a9.
      
 0.538
ZBTB21
Zinc finger and BTB domain containing 21.
      
 0.536
ENSCHAP00000049610
annotation not available
    
 0.535
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.